Changelog

Source: NEWS.md

isoformic (development version)

• Nothing yet

isoformic v0.1.1

Reference and Annotation

• download_reference(): now supports organism = c("human", "mouse"), with organism = "human" being the default.
• download_reference(): argument file_type = "gtf" is the default.
• prepare_annotation(): Parse both GTF and GFF file formats into required annotation data.

Differential Expression Analysis

• created run_swish_pairwise() function.

Bug Fixes

• prepare_profile_data(): accepts matrix and data.frame as input for the txi_transcript argument.

isoformic v0.1.0

• Initial support for SummarizedExperiment and MultiAssayExperiment.

isoformic v0.0.1

• Release of the initial workflow.