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Prepare Annotation

Source: R/prepare_exon_annotation.R
prepare_annotation.Rd

Prepare annotation to be imported as rowRanges and rowData for both Genes, Transcripts and Exons based Position Annotation Table. From a GTF or GFF3 annotation file.

Usage

prepare_annotation(file_path, file_type = c("gtf", "gff"))

Arguments

file_path

Path to annotation file.

file_type

Character indicating the type of file to download. One of "gtf" or "gff". Defaults to "gtf".