Skip to contents

Create Transcript to Gene Relationship Table

Source: R/functions.R
make_tx_to_gene.Rd

This function can extract a transcript to gene relationship table from GENCODE annotation files, such as the transcriptome FASTA and GFF3 or GTF annotation files.

Usage

make_tx_to_gene(file_path, file_type = "fasta")

Arguments

file_path

Path to file containing the reference.

file_type

Character indicating the type of file to download. One of "gtf", "gff", or "fasta". Defaults to "gtf". NOTE: "fasta" refers to the transcriptome FASTA.