Loads a small IsoformicExperiment bundled with the package: transcript abundances (TPM) for the isoforms of a handful of genes from a preeclampsia placenta RNA-seq study (25 samples), GENCODE v33 annotation for those genes, and transcript- and gene-level differential expression results. It is used throughout the documentation and is suitable for trying every method of the class in well under a second.
Examples
iso <- example_isoformic()
iso
#> <IsoformicExperiment> pe_placenta_example
#> annotation : gencode_v33_example_subset (69 genes, 892 transcripts, 7,032 exons)
#> samples : 25 [condition]
#> transcripts: 499 assayed from 69 genes
#> assays : abundance, counts
#> gene assays: derived from transcript assays on demand
#> DE results : det (499 transcripts), deg (69 genes)