Run Swish Differential Expression

Run swish method for a SummarizedExperiment with inferential replicates.

Usage

run_swish_pairwise(se, contrast_var = "condition", ...)

Arguments

se

SummarizedExperiment object.

contrast_var

column name from colData(se).

...

Additional arguments passed to fishpond::swish().

Value

SummarizedExperiment object.