
Prepare Exon based Position Annotation Table
Source:R/prepare_exon_annotation.R
prepare_exon_annotation.Rd
Prepare Exon based Position Annotation Table
Usage
prepare_exon_annotation(gene_name, file_path, file_type = c("gff", "gtf"))
Arguments
- gene_name
String or vector of gene names to extract.
- file_path
Path to annotation file.
- file_type
A character string specifying the type of file to download. Valid options are
"gff"
,"gtf"
,"fasta"
or"genome_fasta"
. Defaults to"gff"
. Note:"fasta"
refers to the transcriptome FASTA file."genome_fasta"
refers to the whole genome sequence FASTA file.