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Convert a SummarizedExperiment to an IsoformicExperiment Object

Source: R/as_isoformic.R
as_isoformic.Rd

This function converts a SummarizedExperiment object to an IsoformicExperiment object. It extracts the assays, row data, column data, and metadata from the input object and uses them to create a new IsoformicExperiment object.

Usage

as_isoformic(se, annot_path, annot_type = c("gff", "annot_db"))

Arguments

se

A SummarizedExperiment object to be converted.

annot_path

Path to the annotation file. This can be a GFF file or the path pre-built annotation database created with [prepare_isoformic_annotation()].

annot_type

Type of the annotation file provided. Options are "gff" for GFF files and "annot_db" for pre-built annotation databases.