Install packages in a Conda environment — install

Installs packages into an existing condathis environment. If the target environment does not exist, it is created first.

Usage

install_packages(
  packages,
  env_name = "condathis-env",
  channels = c("conda-forge"),
  channel_priority = c("disabled", "strict", "flexible"),
  additional_channels = NULL,
  verbose = c("output", "silent", "cmd", "spinner", "full")
)

Arguments

packages: Character vector of package MatchSpec strings to install.
env_name: Character string with the target environment name. Defaults to "condathis-env".
channels: Character vector with channel names used for dependency resolution. Defaults to "conda-forge".
channel_priority: Character string with channel priority mode. Supported values are "disabled", "strict", and "flexible". Defaults to "disabled".
additional_channels: Character vector of additional channels appended to channels. Defaults to NULL.
verbose: Character string controlling console output. Supported values are "output", "silent", "cmd", "spinner", and "full". Defaults to "output".

Value

A process result list (from processx::run()) with command output, error output, exit status, and timeout information.

Examples

if (FALSE) { # \dontrun{
condathis::with_sandbox_dir({
  condathis::create_env(
    packages = "bioconda::fastqc",
    env_name = "fastqc-env"
  )
  # Install the package `python` in the `fastqc-env` environment.
  # NOTE: It is not recommended to install multiple packages in the same
  # environment, as it defeats the purpose of isolation provided by
  # separate environments.
  condathis::install_packages(packages = "python", env_name = "fastqc-env")
})
} # }